MAMMOTH

• MAMMOTH (Matching Molecular Models Obtained from Theory) is a sequence-independent protein structural alignment method. It allows the comparison of an experimental protein structure with an arbitrary low-resolution protein tertiary model. It also allows the comparison of two experimental structures, or the search for similar structures to a query structure in a database.
• Version: 1.0
• Free use for Educational and Research Purposes.
• Download: register and login
• Reference: Ortiz AR, Strauss CE, Olmea O (2002) Protein Sci. 11:2606-21.

MAMMOTH-mult

• MAMMOTH-mult is a multiple alignment version of MAMOTH. It multiply aligns protein structures, providing a common 3D superimposition, a corresponding structure-based sequence alignment and a dendrogram for the set of structures aligned.
• Version: 1.0
• Free use for Educational and Research Purposes.
• Download: register and login
• Reference: Lupyan D, Leo-Macias A, Ortiz AR (2005) Bioinformatics (2005) 21, 3255-63