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Jornada BIPEDD2 - Plataforma VSDMIP (29/11/2012)

Material

Biophysics Master (2012/2013)

Bioinformatics

Small molecule Docking

- Classes

- Downloads

Introduction to Computer Programming with MATLAB

- Classes

- Exercises

- Final project

  • Implementation of Needleman‐Wunsch algorithm with Matlab DOC | PDF
  • Implementación del algoritmo Needleman‐Wunsch con Matlab DOC | PDF

Aligment Example:


Seq 1: CTCAGCCCTTCCCAGCACTTCTCCCACTTTGTCCCGAGCCTCCTTCTCCCCCAGCAGG
Seq 2: CTCAGCACTTACCCAGGACTTTTCACCACTTTTCCCAGACTCCTCCCCTAGCAGG

Result:


Seq 1: -TCAGCCCTT-CCCAGCACTTCTC-CCACTTTGTCCCGAGCCTCCTTCTCCCCCAGCAGG
Seq 2: CTCAGCACTTACCCAGGACTTTTCACCACTTT-TCCC-AGACT-C--CTCCCCTAGCAGG

- Additional resources


Other Courses

  • 20/12/2011 - Master Bioinformatica UCM : Materials
  • 03/11/2011 - Curso Leon : Materials
  • 20/06/2011 - Workshop on docking and virtual screening: Computational tools for drug design : Materials
  • 27/05/2011 - Introduction to protein crystallography : Materials
  • 20/05/2011 - Curso CEU : Materials

MM-ISMSA Practical Session

Course guide-line and documentation: Download

Protein-Ligand Data

  • Global energy results raw complexes Download
  • Global energy results minimized complexes - Download
  • Protein-Ligand complexes Download

Protein-Protein Data

  • RMSD and Global energy values of the docking solutions Download
  • Protein-Protein complexes Download

Molecular Dynamic Data

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