Pascual-García A, Arenas M, Bastolla U. The molecular clock in the evolution of protein structures. Mol Biol Evol, submitted (2017).
A. Pascual-Garcia; D. Abia; R. Méndez; G.S. Nido and U. Bastolla
Quantifying the evolutionary divergence of protein structures: The role of function change and function conservation.
Proteins. 2010 78:181-96 .
[Pubmed]
Pascual-Garcia, A.; Abia, D.; Ortiz, A.R. and Bastolla, U.
Cross-over between discrete and continuous protein structure space: insights into automatic classification and networks of protein structures.
PLoS Comput Biol, 5, e1000331.
[Pubmed]
[PDF]
Lupyan, D.; Leo-Macias, A.; Ortiz, A.R.
A new progressive-iterative algorithm for multiple structure alignment.
Bioinformatics (2005) 21, 3255-63.
[Pubmed]
[PDF]
Leo-Macias, A.; Lopez-Romero, P.; Lupyan, D.; Zerbino, D.; Ortiz, A.R.
Core deformations in protein families: a physical perspective.
Biophys Chem (2005) 115, 125-8.
[Pubmed]
[PDF]
Leo-Macias, A.; Lopez-Romero, P.; Lupyan, D.; Zerbino, D. ; Ortiz, A.R.
An analysis of core deformations in protein superfamilies.
Biophys J (2005) 88, 1291-9.
[Pubmed]
[PDF]
Ortiz, A.R.; Strauss, CE.; Olmea, O.
MAMMOTH (matching molecular models obtained from theory): an automated method for model comparison.
Protein Sci (2002) 11, 2606-21.
[Pubmed]
[PDF]
S. Wallin, J. Farwer, U. Bastolla. Testing distance measures with continuous and discrete protein models. Proteins 50 144-157 (2002) [Article]